Using GeneAnnotation set by addArchRGenome(Hg19)! Using GeneAnnotation set by addArchRGenome(Hg19)! ArchR logging to : ArchRLogs/ArchR-createArrows-17ac173ce64e3-Date-2021-07-01_Time-15-15-57.log If there is an issue, please report to github with logFile! 2021-07-01 15:15:57 : Batch Execution w/ safelapply!, 0 mins elapsed. Attempting to index /Users/zhaoyimin/Desktop/COVID Project/GSM5285736_28205-0558_fragments.tsv.gz as tabix.. 2021-07-01 15:16:19 : (ATAC_558 : 1 of 1) Reading In Fragments from inputFiles (readMethod = tabix), 0.366 mins elapsed. 2021-07-01 15:16:19 : (ATAC_558 : 1 of 1) Tabix Bed To Temporary File, 0.366 mins elapsed. 2021-07-01 15:20:54 : (ATAC_558 : 1 of 1) Successful creation of Temporary File, 4.939 mins elapsed. 2021-07-01 15:20:54 : (ATAC_558 : 1 of 1) Creating ArrowFile From Temporary File, 4.939 mins elapsed. 2021-07-01 15:22:48 : (ATAC_558 : 1 of 1) Successful creation of Arrow File, 6.839 mins elapsed. 2021-07-01 15:23:42 : createArrowFiles has encountered an error, checking if any ArrowFiles completed.. ArchR logging successful to : ArchRLogs/ArchR-createArrows-17ac173ce64e3-Date-2021-07-01_Time-15-15-57.log
ArrowFiles character(0)
I don't know where is the error. Attached is the link for data I used.
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5285736
