The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here.
This edition of the Herald was brought to you by contribution from natay, Dunois, and was edited by natay,
GitHub - nextflow-io/nextflow: A DSL for data-driven computational pipelines (github.com)
Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows. It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Cloud Life Sciences, and Kubernetes. Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules.
submitted by: natay
Seq2Fun - Home (www.seq2fun.ca)
Seq2Fun: Ultrafast functional profiling of RNA-seq data for nonmodel organisms. The basic idea is to look for ORFs in the RNA-seq data and translate them directly, thereby avoiding a potentially tedious assembly process. The publication can be found here: https://genome.cshlp.org/content/31/4/713 .
submitted by: Dunois
RStudio AI Blog: Que haja luz: More light for torch! (blogs.rstudio.com)
Torch interface for R. Brings R one step closer towards parity vis-a-vis python in terms of deep learning applications.
submitted by: Dunois
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