R ---issues. on server. BiocManager", "genefilter"

Question

[Nai]

Reading package lists... Done Building dependency tree Reading state information... Done libxml2-dev is already the newest version (2.9.3+dfsg1-1ubuntu0.7). 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.

When I am trying BiocManager::install("genefilter"). I am getting the following issue...

'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories: CRAN: https://cloud.r-project.org

Bioconductor version 3.10 (BiocManager 1.30.16), R 3.6.3 (2020-02-29) Warning message: package(s) not installed when version(s) same as current; use force = TRUE to re-install: 'genefilter'

Kindly help me....If I don't use R without sudo then I get an error genefilter non zero exit status. I tried force = TRUE to re-install: 'genefilter'too..then genefilter non zero exit status

[Sam]

From the error message it seems like you have already installed genefilter, can you confirm if you can do library(genefilter)?

[Sam]

Can you try BiocManager::install("genefilter", force = TRUE)

Answer 1

[Nai]

Error in library(genefilter) : there is no package called ‘genefilter’