Entering edit mode
3.5 years ago
Nai
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50
Reading package lists... Done Building dependency tree Reading state information... Done libxml2-dev is already the newest version (2.9.3+dfsg1-1ubuntu0.7). 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
When I am trying BiocManager::install("genefilter")
. I am getting the following issue...
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories: CRAN: https://cloud.r-project.org
Bioconductor version 3.10 (BiocManager 1.30.16), R 3.6.3 (2020-02-29) Warning message: package(s) not installed when version(s) same as current; use force = TRUE to re-install: 'genefilter'
Kindly help me....If I don't use R without sudo then I get an error genefilter non zero exit status. I tried force = TRUE to re-install: 'genefilter'too..then genefilter non zero exit status
From the error message it seems like you have already installed
genefilter
, can you confirm if you can dolibrary(genefilter)
?Can you try
BiocManager::install("genefilter", force = TRUE)