Hello,
I have samtools version 1.12 h9aed4be_1 bioconda
I have installed bcftools version 1.8 h4da6232_3 bioconda
and when I try to run bcftools I get :
bcftools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
My channels order is:
conda config --show channels
channels:
- conda-forge
- bioconda
- defaults
- nvidia
What can I do?
what does
tell you?
did you try jared.andrews07 's installation instructions?
I am working with a remote server of the university so I don't have the option to use sudo apt .. I usually use conda install
I tried
conda install -c anaconda openssl
I have a similar issue, except my error is
I use
mamba
. I created an environment:Then I did this:
When I try out
bcftools
I get the error.Based on this comment, I am thinking I need to compile it from source instead of through
mamba
. Is this true, is there an easier way?This should not have been an answer, so I've moved it to a comment.
Ah, if you do
mamba install -c conda-forge bcftools vcftools tabix polars pandas numpy scikit-learn gsl==2.5
, it will forcemamba
to install the older version ofbcftools
(v1.10) - that's a downside, but I only need to convert some files.And yes, this works too. Ok. Solved for me! Thank you all!