Entering edit mode
3.4 years ago
jhy
▴
10
Hi,
I'm making panel of normals using CreateSomaticPanelOfNormals (BETA) in GATK4.2.0 0.
I got a message "Warning: CreateSomaticPanelOfNormals is a BETA tool and is not yet ready for use in production".
Then what is the tool to replace CreateSomaticPanelOfNormals?
I followed the step below.
step 1. Run Mutect2 in tumor-only mode for each normal sample.
step 2. Create a GenomicsDB from the normal Mutect2 calls.
step 3. Combine the normal calls using CreateSomaticPanelOfNormals.
If you know the answer, please reply. Thank you.
