How do I extract predicted genes from annotation from MAKER-P?

Question

[eennadi]

Hello,

Please how can I extract these matrix from my annotations? I annotated my genome using MAKER-P and would want to know the following from the annotated file:

Number of protein-coding genes in the assembled tea plant genome Those with known proteins and/or domains . Annotation of noncoding RNA genes ribosomal RNA genes Number of transfer RNA genes, Number transcription factor genes and simple sequence

Thanks

Answer 1

[Juke34]

You can do it with agat_sp_statistics.pl and agat_sp_functional_statistics.pl from AGAT