Is there an online server to get a great phylogenetic tree?

Question

[andreapamela.aguilar]

Hello, I need your knowledge. I am looking for an online server (like Galaxy) that allows to obtain a phylogenetic tree for 200 bacterial genomes (or a program that supports this volume of information). Our server is not working and I am starting in the fascinating world of bioinformatics, so I am not yet familiar with all the resources available on the web

[Nitin Narwade]

I guess PATRIC would help you, but I am not sure about the limit on the number of genomes. For tree visualization, I would suggest iTOL

[GenoMax]

Uploading data to PATRIC would make it public or so it appears. So that may be something OP will need to keep in mind.

andreapamela.aguilar : Are you planning to select a few genes and create trees for those? You can take a look at the tool mentioned in this thread: Whole Genome Tree

Other thread that may be of interest: Phylogenetic tree of gene clusters

Answer 1

[Mensur Dlakic]

There are numerous desktop programs that can handle 200 tree branches, so you need not be looking for online resources only. iTOL is hard to beat if you decide to stay with online tools.

There is an extensive list of phylogeny resources, and most of them are free. You will need to scroll down to Interactive tree manipulation for tree visualization programs.

A couple of other resources that may be of interest to you:

• https://www.jove.com/t/50975/a-practical-guide-to-phylogenetics-for-nonexperts
• https://ucmp.berkeley.edu/subway/phylogen.html
• http://etetoolkit.org/treeview/