Entering edit mode
3.4 years ago
Aliviya
•
0
I tried to run my Trinity command for the assembly but this is the error I've been getting .. please help let me know where did I go wrong. I'm new to this analysis field.
Error, cannot locate Trinity-specific tool: ParaFly in the PATH setting: /usr/local/bin/trinity-plugins/BIN:/home/aliviya21/anaconda3/bin:/home/aliviya21/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/aliviya21/Downloads/bowtie2-2.4.1:/home/aliviya21/BIONIVID/trinityrnaseq-v2.13.0, be sure to install Trinity by running 'make' in the base installation directory
Thank you in advance
Use
conda
to install.conda create -n trinity trinity
and thenconda activate trinity
should do it. Reference: Creating workflows with snakemake and condaI did the same prior, created an env and tried running the program. This is the error I've been getting the same one with or without an environment. . Error, cannot locate Trinity-specific tool: ParaFly in the PATH setting: /usr/local/bin/trinity-plugins/BIN:/home/aliviya21/anaconda3/envs/trinity/bin:/home/aliviya21/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/aliviya21/Downloads/bowtie2-2.4.1:/home/aliviya21/BIONIVID/trinityrnaseq-v2.13.0, be sure to install Trinity by running 'make' in the base installation directory