Manhattan Plot in R with 100 non-numeric contigs and chromosomes
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3.3 years ago
Michal Nevo ▴ 140

Hello, I have PLINK assoc file with 67 chromosomes and many contigs ( all of them non-numeric ).

enter image description here

How can I create a Manhattan Plot?
contigs chromosomes R Manhattan non-numeric • 698 views
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Manhattan is just a scatter plot, sort by CHR and BP, then add a row number, then plot. x as rownumber y as -log10(P).

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