Hi,
I am new to bioinformatics. Currently I have the a list of identified SNPs
from trio human population
. I am planning to do phasing
to figure out the proportion of the SNPs coming from paternal and maternal?
I also have the pedigree
file as well.
Just wondering what is the best R package, software that help me to do such analysis? Dose SHAPEIT4
or smartphase
or PULSAR
good for this purpose?