Positional restraint energy is too big
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3.3 years ago

Hello, I am running equilibration of protein system to prepare it for md simulation and I encountered a problem that says "Compute_Energy_Restraints_Pos> Positional restraint energy is too big (see "Chapter: Trouble shooting" in the user manual) rank_no = 15". My system consist of two proteins of 401 and 571 amino acids longs and I am applying restraints on all residues. Please does someone knows how to solve this problem?

Molecular Dynamic simulation Amber Equilibration • 474 views
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