Question

GATK call arm level chromosome copy number variations (cnv)

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3.3 years ago

SunRise2019 ▴ 100

Hi, I am new to GATK and would like to know how to make cnv calls for chromosome arms. Any idea? Thanks.

cna gatk cnv • 770 views

ADD COMMENT • link updated 3.3 years ago by vdauwera ★ 1.2k • written 3.3 years ago by SunRise2019 ▴ 100

score 0 · Answer 1 · 2021-08-29

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3.3 years ago

vdauwera ★ 1.2k

You can ask this in the GATK forum, their support team will point you to the information resources you need and assist you if you run into any problems.

https://gatk.broadinstitute.org/hc/en-us/community/topics

ADD COMMENT • link 3.3 years ago by vdauwera ★ 1.2k