Question

how to get the name of a protein from a sequence?

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3.4 years ago

Mo ▴ 920

I have over 10000 protein sequences and I want to know if there is a way to get their names based on Human database ?

proteome • 1.0k views

ADD COMMENT • link updated 3.4 years ago by lieven.sterck 15k • written 3.4 years ago by Mo ▴ 920

score 0 · Answer 1 · 2021-08-31

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3.4 years ago

lieven.sterck 15k

You blast your sequences against the human database and go from there.

ADD COMMENT • link 3.4 years ago by lieven.sterck 15k

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@lieven.sterck only with 10000 sequence? how should I arrange my fasta?

ADD REPLY • link 3.4 years ago by Mo ▴ 920

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you put them all in a single fasta file and start the blast.

Is the 'issue' that you are planning to use the web-resource from NCBI blast?

ADD REPLY • link 3.4 years ago by lieven.sterck 15k