Removing headlines in fasta file in python

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3.3 years ago

Maliha • 0

I want to remove the headlines of a fasta file that contains multiple protein sequences. I need to count the amino acid numbers.

>Os12t0641500-03 Similar to RecF/RecN/SMC N terminal domain containing protein, expressed.
MAAAAAGKGGGGQGRIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFV
LIKVPLL*
>Os12t0597800-01 Similar to Helix-loop-helix DNA-binding domain containing protein, expressed.
MMSFPYSSGDLGEATTAAAAAVDMITLDQMFRDYDASTGDDLFELVWESCGGGEIDSGAG
LGRQ*
>Os12t0598600-00 Similar to H0315A08.1 protein.
MKRSMNYSGIECFTFGDDNKLRIFPPNSYKFKPKDHIILDEVQECILDNFWYQYNNKREE
FSDLDTMDLGGHGQPDE*

fasta python • 915 views

ADD COMMENT • link updated 22 months ago by Ram 44k • written 3.3 years ago by Maliha • 0

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Hello,

it's not clear what you are trying to achieve. Please add an example of your desired output and explain how it is related to the input.

fin swimmer

ADD REPLY • link 3.3 years ago by finswimmer 16k

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Check BioPython for that

ADD REPLY • link 3.3 years ago by JC 13k

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