What is the Rfam version on Biomart Ensembl?

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3.3 years ago

p.l.rehorst • 0

Hi all,

To enhance RNAseq annotation I would like to use Rfam. I encountered two different version of Rfam on Biomart and on RNAcentral. For the Rfam on RNAcentral I could find that the current version is 14.2, but the version info was not available on Biomart. However, both Rfam databases contents are slightly different.

Does anyone know the current version of the Rfam database on Biomart Ensembl? ( human genes, GRCh38.p13)

https://www.ensembl.org/biomart/martview/4961a17e7657ab2d5a14dc2101ae626d

Would be appreciated!

Patrick

Rfam version Biomart RNAcentral • 1.5k views

ADD COMMENT • link 3.2 years ago by p.l.rehorst • 0

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Many sites make local BioMart's available. It would help to know which BioMart you are referring to. Can you add links by editing your post?

ADD REPLY • link 3.3 years ago by GenoMax 148k

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Hi GenoMax,

Thanks for your reply. I updated the info in my post.

ADD REPLY • link 3.2 years ago by p.l.rehorst • 0

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You will need to email Ensembl help desk for this.

ADD REPLY • link 3.2 years ago by GenoMax 148k

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Thanks, I will contact them about this issue.

ADD REPLY • link 3.2 years ago by p.l.rehorst • 0

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What species is this for?

ADD REPLY • link 3.2 years ago by Emily 24k

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Hi Emily,

Ensembl genes 104 - human genes GRCh38.p13

ADD REPLY • link 3.2 years ago by p.l.rehorst • 0

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