Fetch HGNC id from gene symbol in python
1
0
Entering edit mode
3.3 years ago
gopi ▴ 10

Hi, I am having thousands of gene symbols and I want to get their HGNC id's. I tried downloading HGNC rdf file from bioportal and used sparql to fetch most of the gene id's. However, the HGNC rdf from bioportal was last updated almost 10 years back. Is their more efficient way to get gene id's from gene symbols?

python hgnc sparql • 1.6k views
ADD COMMENT
0
Entering edit mode

HGNC data is downloadable. Parse locally with python.

ADD REPLY
0
Entering edit mode
3.2 years ago
plwhetzel • 0

HGNC has a REST API https://www.genenames.org/help/rest/

ADD COMMENT

Login before adding your answer.

Traffic: 1898 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6