I have been trying to run kmergenie for my data on ubuntu and every time I enter the code it gives an import error: no module named readfq
. I have tried downloading the module from bioconda and when checking the directory it showed that the module was indeed downloaded. However, the error keeps popping up. I have been trying to run the software in a python 2.7 environment and have R installed. I saw there was a bug report regarding this issue on git-hub and that it was resolved. However, I am still facing the error. any help would be greatly appreciated
Have you tried to use
python 3.x
?Yes, we tried version 3.6 However, the same error came up
It looks like the build script in bioconda no longer matches how kmergenie should be installed.