Extract root(start) and leaf(end) states programmatically in monocle2
0
0
Entering edit mode
3.3 years ago
am ▴ 60

Dear bioinformaticians, do you know how to extract starting state and end states from the CDS in monocle2 ? I know I can detect them visually inspecting the States plot after I compute the pseudotime. I am asking if there is another way to get terminal state ids because I would like to avoid working interactively in R and streamline the analysis.

Thank you very much for your advice!

branches monocle2 states end start • 566 views
ADD COMMENT

Login before adding your answer.

Traffic: 1404 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6