Loading a genome in BSgenome

Question

[deepti1rao]

Is it possible to load a genome assembled by me (sequence not submitted to any database yet) in the BSgenome package for further study? How?

Answer 1

[josev.die]

Same question here. Please, let us know if you figure out how to do it.

[xiaoleiusc]

I have the same problem, in this case, we need to forge a custom BSgenome (https://www.bioconductor.org/packages/devel/bioc/vignettes/BSgenome/inst/doc/BSgenomeForge.pdf).

[josev.die]

Hi. You are right. We followed that vignette to forge our custom genomes :

• chickpea
• asparagus