How to calculate phred score of fastq files?
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3.2 years ago

Hello All,

I want to calculate the Phred score for given fastq file. Is there any command line tools are available?

For example

Sample Name Phred score

sample1_R1.fq 36.24

sample1_R2.fq 37.35

Sample2_R1.fq 35.85

Sample2_R2.fq 35.10

please help
linux phred fastq • 1.5k views
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Check the explanation in this thread (yes there are two solutions) : FASTQ Phred33 average base quality score

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