R script end to end meta analysis geo download data

Question

[xinhui.wang]

Hi all, I am looking for an efficient workflow in R which could run the meta-analysis (like plot, heatmap, test) on the data downloaded from the GEO dataset (human genome, HumanMethylation, etc). I know there is some end-to-end workflow on the crossing R work packages. could someone give me a suggestion which one you think is the more efficient one? Thanks in advance! Best, Xinhui

Answer 1

[bigomics.team]

GEO has a function Geo2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/) where you can get some basic plots from the data.