what is bam format file flag 0x2 mean?
1
0
Entering edit mode
3.2 years ago
Tao ▴ 40

enter image description here

I find the sam PDF,and want to understand flag 0x2,but I can not understand. where have some detailed instructions for it ?

bam flag sam • 1.7k views
ADD COMMENT
2
Entering edit mode
3.2 years ago

in a paired end, both fragments are mapped on the same contig, anti-parallel to the other, at a good distance.

see slide 33 of https://www.slideshare.net/lindenb/next-generation-sequencing-file-formats-2017

ADD COMMENT
0
Entering edit mode

Thanks a million.

ADD REPLY
0
Entering edit mode

For Hi-C reads which two parts of the read could be separated far apart, will it be labelled as "properly paired"?

ADD REPLY

Login before adding your answer.

Traffic: 2665 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6