Most well regarded piRNA detection pipeline/program

Question

[RNAseqer]

I'm about to look for piRNAs in some miRNAseq data. What are the most well established programs or pipelines for detecting piRNAs in human small RNA seq data?

Answer 1

[A. Domingues]

I would not say there is one that stands out, but there are a couple which I would recommend:

• https://github.com/bowhan/piPipes
• https://www.smallrnagroup.uni-mainz.de/software.html

[RNAseqer]

Thank you, those links were helpful!