How can I know the BLAST percentage from kraken2 files ?
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3.2 years ago

How can I know (or calculate) the BLAST alignment percentage from kraken2 report file.
kraken2 BLAST • 822 views
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You can't.

In no moment whatsoever Kraken2 performs an alignment. Morever, BLAST is BLAST, Kraken2 is Kraken2, they are not related and perform different kind of analyses.

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