Awk merge txt with database based on match
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2
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3.2 years ago
Mgs3 ▴ 30

I have a file (file1) with two column (ID and count) as such:

 APH(3'')-Ib 3486552
 mphA 7453
 acrB 6444
 kdpE 4982

and another file (file2) with a list of all the IDs

mphA
APH(3'')-Ib 
cruB
acrB 
kdpE 
vadA

I need to compare the IDs of file1 with the file2: if is present, print the read count. Output desired:

mphA 7453 
APH(3'')-Ib 3486552
cruB 
acrB 6444
kdpE 4982
vadA

I looked at similar question like this but i'm not able to adapt the script to my situation

bash awk card • 1.1k views
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1
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Sounds like a job for join

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0
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Thanks for the lead, i leave here the command i used for the future

join -a 2 file1 file2 > table
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