What is a fast tool for searching sequence motifs in a large set of sequence files?

Question

[mrj]

could you please recommend to me a tool that is fast for searching a given set of sequence motifs in a large sequence file? It is great if this tool can be run in multiple threads.

Answer 1

[shenwei356]

Seqkit grep searches sequences containing motifs, and seqkit locate reports the motif locations. It's fast.

[mrj]

Thank you for this answer