How can I export raw count profile from DiffBind to be analyzed on DESeq2 separately?

Question

[mrj]

I am performing some ATAC-seq analysis. I would like to export the output files as a raw abundance profile so that I can analyze them on DESeq2 separately.

I am aware that DiffBind contains DESeq2 internally. However, I would like to perform DESeq2 part outside of DIffBind.

Could you please, show me how to export these files properly?

Answer 1

[ATpoint]

https://support.bioconductor.org/p/71301/

[mrj]

Thank you!