Alignment of genomes and get statistics about alignment

0

Entering edit mode

3.1 years ago

Picasa ▴ 650

Hi,

I have 3 genomes: 1 reference and 2 query. I would like to know which of the 2 query is more similar to the reference.

I use to use nucmer for genome alignment but I can't find a way to get statistics about global percentage of identity ... or maybe I missed something ?

Do you have any recommendation for doing that ?

Thanks

genome • 964 views

ADD COMMENT • link updated 3.1 years ago by manaswwm ▴ 550 • written 3.1 years ago by Picasa ▴ 650

0

Entering edit mode

whole genome alignment using nucmer

ADD REPLY • link 3.1 years ago by manaswwm ▴ 550

0

Entering edit mode

I know how to align genome with nucmer and got the plot etc. But I am looking for alignment statistics

ADD REPLY • link 3.1 years ago by Picasa ▴ 650

0

Entering edit mode

Maybe the answer from one of the user is useful for you, hence the comment

ADD REPLY • link 3.1 years ago by manaswwm ▴ 550

Login before adding your answer.