vcf file indiviual column interpretation
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3.1 years ago
Nai ▴ 50
QUAL    2460.98
FILTER  PASS
INFO    ASP;CAF=0.9778,0.02216;COMMON=1;
FORMAT  GT:AD:AF:DP:F1R2:F2R1:GQ:PL
sample1 0/0:2,0:.:2:.:.:6:0,6,57
sample2 0/0:30,0:.:30:.:.:90:0,90,1012
sample3     0/0:24,0:.:24:.:.:72:0,72,779
sample4  0/0:29,0:.:29:.:.:86:0,86,976

I would like to know what is the each sample explaining. The result belong to 1 rsid

vcf rsid • 804 views
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3.1 years ago
4galaxy77 2.9k

This explains it pretty well https://en.wikipedia.org/wiki/Variant_Call_Format

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