Entering edit mode
3.2 years ago
RNAseqer
▴
280
I am looking to use an R based eigenstrat function that takes " a m*n matrix, in which the element in the ith row and the jth column represents the genotype of the jth subject at the ith marker" like so:
210110202102111010121212102121
010012122220120012110202211101
011111201220222102211111101020
022120221212012102120012010112
121212001022012011111100211012
201010021010122010111112200222
100221111100021001011100221111
112012112001211001101110000211
Does anyone know if vcftools or some other package can make this conversion from a vcf file? If so do you know the command to do so?
