Transcription start site (TSS) prediction in bacteria

Question

[soren.narges]

Hi,

I am working on regulatory features in bacterial genome and was wondering to ask if anyone has experience with tools available for the transcription start site (TSS) prediction procedure. Currently, I am using TSSpredator but was wondering about other state-of-the-art options you could suggest (especially packages in R).

Thanks for the help in advance!

Answer 1

[G.S]

Hi,

Maybe you'll find this recently published paper useful: https://journals.asm.org/doi/10.1128/mSystems.00439-20

Cheers!