Question

Bam to count data

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3.0 years ago

Rana01 ▴ 20

After completing genome mapping I have few bam files which I need to convert to count data. How should I convert the bam files to count data in r studio?

Bam • 980 views

ADD COMMENT • link updated 20 months ago by Ram 44k • written 3.0 years ago by Rana01 ▴ 20

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define "count data"

ADD REPLY • link 3.0 years ago by Pierre Lindenbaum 164k

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I need to convert to count data to run differential sequence analysis

ADD REPLY • link 3.0 years ago by Rana01 ▴ 20

score 2 · Answer 1 · 2021-11-10

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3.0 years ago

solomoncharles77 ▴ 90

You can try featureCounts from the package Rsubread.

ADD COMMENT • link 3.0 years ago by solomoncharles77 ▴ 90