How to obtain list of transcription factors and their sequence binding motifs?

Question

[Adam]

Hello,

is it possible (for example via R) to obtain sequence binding motifs of particular transcription factors given as input? From this:

TF  motif
MED1    
MYB 
MYC 
NOTCH1  

To this:

TF  motif
MED1    ACAGATTA
MYB GGCGTAAC
MYC TTAGCGTA
NOTCH1  CCAGTGAT

What I did so far? I used CistromeDB to find peaks (experimental data) that overlap my regions of interest. Now I know that some TF's bind to my region of intrest (peaks), however I'm looking for exact sequence motifs.

Thank you! Adam

Answer 1

[Ankit]

Try

https://hocomoco11.autosome.ru/downloads_v11