Existing database graphs

Question

[Julian.dekker]

Hi all,

I am working on a data integration project using Neo4j graphs. for this, I am searching for existing graphs in either Neo4j or RDF format.

I am aware of the following projects:

• Reactome graph (Neo4j)
• EBI PDB graph (Neo4j)
• Uniprot graph (RDF)
• HetIO graph (Neo4j)

Is anyone aware of more projects? Preferably maintained. please let me know.

Julian

Answer 1

[Giovanni M Dall'Olio]

• Synthetic Lethality Knowledge Graph: I don't know much about this specific database but I've seen graph databases used to explore Synthetic Lethality data
  • TCGA - Regulome explorer is powered by Neo4J
  • Scibite Commercial Graph: this is commercial and requires a license, but if you are only interested in seeing how the database is built and used, you can get information from the blog articles in their website.

[Julian.dekker]

Thanks for the comment, I will take a look at them!