Applying data including both chrX variants and autosomal variants to SKAT

Question

[Apprentice]

I would like to perform variant set analysis using SKAT of the R package. My variant data contains chrX variants in addition to autosomal variants. I know that there is a SKAT_chrX function for the chrX variants data in SKAT of the R package. I would like to know whether the SKAT_chrX function can apply to data including both chrX variants and autosomal variants. Also, can the normal SKAT functions be applied to the data including both chrX variants and autosomal variants?