How to get coordinate of genomic elements?

Question

[Ankit]

Hi everyone,

I need coordinate of following genomic elements in hg38 version.

1. Promoter
2. Enhancers
3. Exon
4. Intron
5. 5'UTR
6. 3'UTR
7. Intergenic
8. CDS
9. LINEs
10. SINEs
11. LTRs
12. N and S shores
13. N and S shelves
14. CpG island
15. Transposons

If anyone can provide leads for even some of the features, please give your suggestions.

Thanks

[Ankit]

I used this package annotatr for genomic features:

For repeats, I obtained list from SQL table

[Ankit]

Promoter http://ftp.ensembl.org/pub/release-104/regulation/homo_sapiens/RegulatoryFeatureActivity/; annotatr

Enhancers http://ftp.ensembl.org/pub/release-104/regulation/homo_sapiens/RegulatoryFeatureActivity/;

https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_latest/extra/enhancer/; annotatr

Exon annotatr

Intron annotatr

5'UTR annotatr

3'UTR annotatr

Intergenic annotatr

CDS annotatr

LINEs http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/rmsk.txt.gz

SINEs http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/rmsk.txt.gz

LTRs http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/rmsk.txt.gz

N and S shores annotatr

N and S shelves annotatr

CpG island Table_Browser -> Regulation->CpG Islands; annotatr