convert from plink format into 012 format

Question

[tim.heinert2]

Hello

I have a .ped file in plink and would like to convert it into the 012 format (0 hom ancestral), 1 het, 2 dom derived. Is there any way to achieve this with an option in plink?

Answer 1

[chrchang523]

plink --file [.ped/.map fileset prefix] --recodeA --out [output prefix]

[RNAseqer]

Very helpful!

Answer 2

[zx8754]

Use --recodeA

See Additive and dominance components