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3.0 years ago
simplitia
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130
Hi I'm using the https://bioc.ism.ac.jp/packages/3.3/bioc/vignettes/DMRcate/inst/doc/DMRcate.pdf function to identify regions that are signficantly different; however I can't find in their paper or function vigenette as to how the window size is chosen? For example is there a fix length that gets shifted until the next in.cpgs = X is found? thanks.
You may have to look at the lambda argument : https://rdrr.io/bioc/DMRcate/man/dmrcate.html