What alignment tools do you use?

Question

[Riku]

Hi all,

I have 4 protein fasta, and I would like to find common protein motif in these fasta. Could you please tell me a useful alignment tools?

I tried to use Multiple Sequence Alignment, but outputed results was difficult to see.

Thank you

[GenoMax]

MEGA (LINK) is a local desktop based option.

Answer 1

[colindaven]

Have a look at Jalview http://www.jalview.org/getdown/release/