Entering edit mode
3.0 years ago
michael.flower.14
▴
200
I'm trying to install VEP, but am getting stuck installing its dependencies.
I try to install as suggested here https://www.ensembl.org/info/docs/tools/vep/script/index.html
cd ~/bin
git clone https://github.com/Ensembl/ensembl-vep.git
cd ensembl-vep
perl INSTALL.pl
But I get this error:
ERROR: DBI module not found. VEP requires the DBI perl module to function
http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#requirements
So, I then try and install DBI as suggested here https://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#requirements
cpanm DBI
But I get this error:
Can't write to cpanm home '/Users/michaelflower/.cpanm': You should fix it with chown/chmod first.
How to I 'fix' it with chown/chmod??
When you can always use
conda
to install.I’ve tried installing in conda, it fails. It keeps failing to resolve a conflict
Make sure you set the channel order correctly. Do the following. Then it should work.
I'm trying that, but not looking promising. It's still having the same problem ...