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3.0 years ago
phoenix.sum13
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90
Is there any efficient way to get the full gene length for my list of genes?
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More info is required, what organism? do you have accession numbers?
For humans, I don't have accession numbers sorry. Any guidance will be really helpful. Thank you!
Hello! You can use the ucsc table browser.. If you want the whole gene length, introns included you can just download the knownGenes table from the GENCODE38 (for HG38) track and do an
awk '{print $18,$3-$2}' <gene file>. If you are only interested in coding regions you can take a look at the blockSizes column.