Extract all snps of particular gene/genes from dbSNP using linux ?
0
0
Entering edit mode
2.9 years ago

How to extract all the snps of particular gene/genes from dbSNP database on linux (VEP or any other tool)?

snps • 652 views
ADD COMMENT
0
Entering edit mode

if you know the coordinates, you can extract the SNPs from dbSNP vcf direct using standard vcf formatting tools like bcftools.

ADD REPLY

Login before adding your answer.

Traffic: 1405 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6