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3.0 years ago
Raman2
▴
30
What exactly are str_contraction in the mutect2 output and what is their significance? The description says "Site filtered due to contraction of short tandem repeat region". Does this mean there was a mutation (snp or indel) in the STR region? What is the difference between a STR mutation call which has PASSed vs filtered due to str_contraction
Thanks!