compare bacterial genomes using kegg and R

Question

[Lille My]

Hi all, I have several new bacterial genomes. I ran kegg's blast koala on the (predicted) protein data. Now I want to compare pathways: see which of the genomes have the same pathways and which have unique ones. Is there a tool or R package for that? Or even better, is there a tool that can also create a visualization of the results? Thanks in advance