How To Find Ld Block For Given Snp

Question

[SVV]

I have a difficulty in finding LD block for set of SNPs. For example, rs1001611 has LD block chr19:45187865-45516167. But for rs10002235, rs10031715, ... dont know. Please help me in this topic.

Answer 1

[chrchang523]

If you want to define blocks from scratch, the latest PLINK 1.9 development build includes the --blocks command for this job, which defines LD blocks using Haploview's default settings. Haploview also supports several other ways of defining LD blocks.