Entering edit mode
2.9 years ago
Hi everyone
I am trying to run trinotate, but when I try to load my files with this:
./Trinotate Trinotate.sqlite init --transcript_fasta Trinitunam.fasta --transdecoder_pep longest_orfs_Trinituman.pep
I get the following error:
Error, cmd: /home/ceixta/Descargas/Programas/Trinotate-Trinotate-v3.2.2/util/trinotateSeqLoader/TrinotateSeqLoader.pl --sqlite Trinotate.sqlite --transcript_fasta Trinitunam.fasta --transdecoder_pep longest_orfs_Trinituman.pep --bulk_load died with ret 65280 at ./Trinotate line 126.
what am I doing wrong ?
Carlos
https://github.com/Trinotate/Trinotate/issues/50
FWIW, the "bulk_load died" error referred to in the URL was apparently fixed by the submitter as, "Update: the problem is fixed! We figured out that the error was due to me not having root permissions on the server. Thanks!" which usually indicates some other problem. If you can't successfully issue commands without being root - that's a problem.