Create GFF3 file based on genomic fasta and cds fasta

Question

[duik78]

I've downloaded the most recent version of the assembly TO1000 from Brassica oleracea (http://ftp.ensemblgenomes.org/pub/plants/release-52/fasta/brassica_oleracea/). There are no GFF3 files available, so I'd like to make them based on the cds fasta file(s) and the genomic fasta file. Is there such a utility available?

Answer 1

[lieven.sterck]

you're looking in the wrong directory ... the one you mention only contains fasta info.

have a look here : http://ftp.ensemblgenomes.org/pub/plants/release-52/gff3/brassica_oleracea/

[duik78]

That's quiet stupid of me... Thanks for the link :)