Trouble with plotMA

Question

[mrinsmrids]

I have been using RStudio to retrieve results through the plotMA function. But unfortunately the results that are being produced seems to look wayward. In fact, I get a blank graph when I try to plot the logFoldChange after performing lfcShrink and passing it to a variable called res.

res <- lfcShrink(dds_subset, coef="Intercept", type="apeglm")
resSig <- subset(res, padj < 0.1)
resSig

[James Sacco]

Try to use DESeq2::plotMA as several packages have a plotMA function.

Answer 1

[ATpoint]

I guess same as here Strange MA plot from DESeq2