rmapper-ls from the SHRiMP mapping package

Question

[17318598206]

If I have a fastq file for paired end sequencing, how do I convert Fastq to Fasta in order to be able to compare with SHRiMP? thank you

Answer 1

[colindaven]

seqtk seq -A in.fq > out.fa

[17318598206]

if i have two fastq files, could i write it as : seqtk seq -A r1.fq r2.fq>out.fa?